Thermo Fisher Scientific Renews Collaboration to Advance Plasma Quantitation Methods in Proteomics

Thermo Fisher and Biognosys to develop industry-leading mass spectrometry-based workflows for the efficient analysis of proteins in complex biological matrices

3 Jun 2019
Charlie Carter
Life Sciences Editor

Industry News

Thermo Fisher Scientific, a world leader in serving science, and Biognosys, a leading developer of next-generation proteomics solutions, will extend their long-standing collaboration to provide advanced data independent acquisition (DIA) mass spectrometry-based workflows for the reliable quantitation of target proteins in plasma and other body fluids. The workflows are used in applications across proteomics, clinical proteomics, translational research and pharmaceutical development.

Most recently, the collaboration has brought together the latest intelligence-driven mass spectrometry technology from Thermo Fisher with the PQ500 Plasma Quantitation kit from Biognosys, to develop a novel and highly efficient method: The Thermo Scientific SureQuant PQ500 method for analyzing plasma and other human body fluids. This method is supported on both the new Thermo Scientific Orbitrap Exploris 480 mass spectrometer and Thermo Scientific Orbitrap Eclipse Tribrid mass spectrometer. The SureQuant internal standard-triggered PRM (IS-PRM) enables scientists to rapidly quantify 500 plasma proteins in a single workflow.

The relationship has also enabled the application of the mass spectrometry-based BoxCar scanning method to DIA for non-targeted, label-free quantitation. BoxCar is a technology developed by the group of Matthias Mann at the Max Planck Institute for Biochemistry in Munich that improves the dynamic range of plasma analysis. The extended collaboration with Biognosys will continue to focus on improving the efficiency of routine analysis of clinical samples and providing scientists access to advanced instrumental methods and workflows, plus new software functionality to rapidly and reliably process the complex datasets generated from DIA workflows.

"Rapidly evolving methods and technology have led to a renewed global interest in the analysis of plasma and tissue samples to support translational and clinical research initiatives, with an emphasis on streamlined workflows that can routinely deliver high quality data for large sample cohorts," said Ken Miller, vice president, life sciences mass spectrometry marketing, Thermo Fisher Scientific. "Our long-standing collaboration has resulted in the development of reliable, high-performance workflow options that will enable scientists to quantitatively profile complex samples using either targeted or untargeted approaches."

"For scientists who want to understand the human proteome, its role in disease and how it can influence the development of future medicines, looking at plasma – the primary component of our blood – is a great place to start," said Oliver Rinner, chief executive officer, Biognosys. "The next phase of our collaboration will progress the application of mass spectrometry-based plasma analysis with highly multiplexed accurate quantification in translational and clinical research, supporting the discovery of new biomarkers and drug targets."

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Thermo Scientific™ Q Exactive™ GC Orbitrap™ GC-MS/MS System

Thermo Fisher Scientific

The Thermo Scientific™ Q Exactive™ GC system is the first-ever combination of high resolution gas chromatography with high-resolution/accurate-mass (HR/AM) Orbitrap detection for the most comprehensive sample characterization. This easy-to-use system provides the most comprehensive characterization of samples in a single analysis for the highest confidence in compound discovery, identification, and quantitation. Building upon the flexible modularity of the Thermo Scientific™ TRACE™ 1300 Series GC, including user-exchangeable injectors and detectors, the Q Exactive GC system has the quantitative power of a GC triple quadrupole MS combined with the high precision, full scan high-resolution/accurate-mass capability that only Orbitrap technology can offer.   Key Features: Advanced quadrupole technology (AQT) for high transmission of selected masses Resolving power up to 120,000 at m/z 200 Part-per-trillion-level sensitivity Thermo Scientific™ Extractabrite™ ion source for robust, rugged electron impact (EI) and chemical ionization (CI) performance Curved linear C-trap for precise ion injection HCD collision cell for higher energy collisional dissociation provides MS/MS ion characterization Intelligent identification software elucidates the nature of each injected sample. Applications: Untargeted and targeted metabolomics Food and beverage Industrial analyses Environmental Pharmaceutical Clinical and toxicology

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Thermo Scientific™ Orbitrap Fusion™ Lumos™ Tribrid™ Mass Spectrometer

Thermo Fisher Scientific

Test new limits of detection, characterization and quantitation with the latest Tribrid™ mass spectrometer. The Thermo Scientific™ Orbitrap Fusion™ Lumos™ Tribrid™ Mass Spectrometer is designed to expand performance in advanced proteomics, biopharma and metabolomics applications, including quantitation using isobaric tags, low level PTM analysis, data independent acquisition (DIA), and top down proteomics. The new instrument features enhanced sensitivity resulting in improved analyte detection, characterization and quantitation, enabling scientists to perform more comprehensive sample analyses faster and with better accuracy than ever before.   Novel Orbitrap Fusion Lumos MS Features: Novel high-sensitivity API interface combines a High Capacity Transfer Tube and an Electrodynamic Ion Funnel for increased ion flux and lower limits of detection Advanced Active Beam Guide prevents neutrals and high velocity clusters from entering the resolving quadrupole Advanced Quadrupole Technology combines high selectivity and efficiency of transfer for selected ions symmetrically across the isolation window Advanced Vacuum Technology improves transmission of high molecular weight ions to the Orbitrap analyzer Novel ETD HD—high dynamic range ETD provides significantly increased fragment ion coverage Established Tribrid MS Features: Tribrid architecture — includes quadrupole mass filter, linear ion trap and Orbitrap mass analyzers Ultrahigh resolving power up to 500,000 FWHM, with isotopic fidelity up to 240,000 FWHM at m/z 200 Acquisition rates of up to 20 Hz for both Orbitrap and linear ion trap MSn analyses Full parallelization of MS and MSn analyses with intelligent ADAPT™ (All Dynamically Available Parallelizable Time) technology Synchronous Precursor Selection (SPS) for MS and MSn experiments significantly increases the number of peptides and proteins identified and improves quantitative accuracy when using isobaric mass tags Flexibility of fragmentation — CID, HCD and optional ETD and EThcD available at any stage of MSn with detection in either the Orbitrap or linear ion trap detector enables detailed structure determination of metabolites, glycans and other small molecules Universal Method provides maximal peptide identifications without method optimization for samples of unknown concentration, reducing sample and instrument time requirements for routine peptide identifi cation experiments Intuitive and flexible drag-and-drop user interface simplifies method development and enables unique and complex workflows

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Thermo Fisher Scientific Renews Collaboration to Advance Plasma Quantitation Methods in Proteomics