Simplify Nucleic Acid Size Selection for Fragment Library Prep with SPRIselect

8 Nov 2012

Product news

SPRIselect from Beckman Coulter Life Sciences utilizes SPRI (Solid Phase Reversible Immobilization)-based chemistry to speed and simplify genomic DNA size selection for next generation sequencing fragment library preparation.

Following shearing, the library construction process requires size selection to produce uniform distribution of fragments. SPRIselect allows size distribution to be adjusted between 150 and 800 base pairs to suit the application and sequencing platform. The process can be performed manually or automated for high throughput in 96-well plates on platforms such as Beckman Coulter Life Sciences’ Biomek Workstations.

SPRIselect reagent kits are available in 5, 60 and 450 mL volumes, enable rapid and consistent size selection, and come with guidelines to assist users in customizing protocols. Gel cartridges, chips and additional instruments are not needed. Samples should be fragmented, double-stranded DNA of 50 µL or greater, dissolved in molecular biology grade water or such standard buffer solutions as Tris or TE.

“This will be enormously valuable to researchers seeking to increase accuracy, efficiency and throughput in gDNA size selection for next-gen sample prep,” said Julie Moore, director of marketing, Beckman Coulter Life Sciences Automation and Genomics. “Scientists will find that SPRIselect enhances both research processes and results in sequencing labs.”

SPRIselect is ideal for use in most common next generation applications, including paired-end, single-end, targeted, ChiP and RNA sequencing, and for use with samples to be run on such platforms as Illumina’s MiSeq, HiSeq and Genome Analyzer IIx; Roche’s 454 GS FLX+ and GS Junior; and Life Technologies’ SOLiD series and Ion Torrent PGM.

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Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.DNA / RNA Extraction and PurificationPurified DNA and RNA are required for numerous downstream molecular biology applications. Consequently, the importance of high-quality DNA/RNA extraction and purification equipment cannot be underestimated. Many purification kits are available and are typically optimized for nucleic acid type and source, including plasmid DNA, genomic DNA, mRNA, RNA and viral nucleic acid purification kits. Automated extraction and purification of nucleic acids can be implemented with magnetic bead separator instruments or high-throughput purification workstations. Find the best DNA/RNA extraction and purification equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Library GenerationLibrary generation refers to the construction of NGS libraries from RNA and DNA sources.DNA Fragment SizingDNA ShearingLibrary PreparationLibrary preparation is a critical step in sequencing workflows, where DNA or RNA samples are converted into libraries for high-throughput, next generation sequencing. This step ensures accurate results and minimizes biases. Explore library preparation kits in our peer-reviewed product directory; compare products, check reviews, and get pricing directly from manufacturers.Size Selection