Shimadzu’s Formula Predictor LCMS System Identifies Unknowns with Greater Certainty Using High Mass Accuracy MS<sup>n</sup> Data

23 Feb 2007

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Answering researchers’ need for improved accuracy and speed in identification of unknown components, Shimadzu Corporation, one of the world’s leading developers of analytical instrumentation, has developed a new system featuring its award-winning LCMS-IT-TOF mass spectrometer.

Using information-rich MSn data, the patent-pending Formula Predictor software takes advantage of multiple levels of fragmentation, isotope pattern verification, and unique fragment-ion filtering techniques to accurately determine the correct formula for unknown components.

Traditional approaches for deducing empirical formulae from mass spec data often depend on very high mass accuracy, which carries a correspondingly high cost, and considerable time input from the user to eliminate low-probability structures. Shimadzu’s new system reduces or eliminates this need for tedious, manual processing of target candidates. In many cases, the software can reduce the collection of target compounds from a high number of possible candidates to predicting the most likely empirical formula with just a simple mouse click.

The first LCMS system to fully utilize the information-rich content of MSn data in formulae prediction, Shimadzu’s LCMS-IT-TOF addresses the needs of biomarker discovery, trace amount impurity identification, and natural products research.

Features of the LCMS-IT-TOF include:

  • High mass accuracy MSn analysis. The high level of accuracy helps scientists process their data with greater confidence by performing accurate database searching and enabling workflows and data interpretation to greater precision.
  • High-sensitivity, full-spectrum TOF analyzer providing low femtomole/picogram detection of multiple components in a single analysis.
  • Constant mass accuracy and mass resolution in all MS modes.
  • Fast data acquisition, up to 10 spectra per second, for efficient peak detection and compatibility with ultrafast HPLC separations.
  • High-speed polarity switching (switching time of 100 milliseconds)

Kozo Shimazu, Corporate Officer & Deputy General Manager Analytical & Measuring Instruments Division for Mass Spectrometry & Life Sciences at Shimadzu Corporation, stated: “Our formula prediction software has been developed to help researchers working in compound verification to identify unknown compounds correctly with higher confidence. We believe that this software further strengthens the unique technology of the LCMS-IT-TOF in delivering an integrated solution to identify or verify empirical formulae.”

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LC-MSLC-MS (liquid chromatography-mass spectrometry) systems and equipment are used for separation and quantitative analysis of complex mixtures, combining liquid chromatography and mass spectrometry. Quantify proteins, contaminants, pesticides or screen for drug metabolites with a high level of sensitivity. LC-MS systems and equipment include reverse phase, normal phase and specialized columns integrated with various MS detectors such as time-of-flight (TOF), quadrupole, orbitrap or ion trap mass analyzers. LC-MS/MS instruments equipped with a qTOF or triple quadrupole analyzer give greater sensitivity and resolving power to your analysis. Find the best LC-MS equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.MALDI-TOF MSMALDI-TOF mass spectrometers (matrix-assisted laser desorption/ionization time-of-flight) are used for the mass analysis of large molecules, including proteins, DNA, polymers and other macromolecules due to its relatively soft ionization, reducing fragmentation whilst allowing fast data acquisition. Tandem mass analyzers such as TOF/TOF systems can be used to increase resolution and sensitivity of your analysis. Find the best MALDI-TOF products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.BiomarkersBiomarkers are biological markers which can be measured and evaluated to indicate a biological state. The use of biomarkers in research and diagnosis can indicate a normal or disease state or drug response of cells / tissues. Biomarkers include genetic markers, cell surface markers such as antigens, antibodies or receptors and secreted molecules such as cytokines. An assay system is required for identification of biomarkers. :