Researchers Identify More Than 200 New Genes Associated with Cell Division

7 May 2007

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Scientists at the Center for Medical Research, University Clinic Graz, have identified approximately 200 new genes associated with cell division, a process that, when uncontrolled leads to cancer. The findings may help researchers better understand the causes of tumor formation as well as identify new therapeutic targets.

Dr. Christian Gülly, leader of the Molecular Core Facility at the Center for Medical Research, measured gene expression levels in cells at various stages of the cell cycle using DNA microarrays from Applied Biosystems, an Applera Corporation business. In addition to finding genes already known to have a roll in mitosis, he identified more than 200 novel genes associated with cell division. Dr. Gülly used RNA interference (RNAi) techniques to discover the function of these genes in dividing cells.

Dr. Gülly had previously attempted this experiment using other commercially available microarray platforms, but was dissatisfied with the results.

“The results we obtained using the Applied Biosystems microarrays were clearly superior to the other systems,” said Dr. Gülly. “And, after successfully validating the results by conventional PCR-based gene expression analyses, I have finally found a system I know I can count on.”

The Molecular Core Facility is the first Austrian institution to participate in the Applied Biosystems Advanced Gene Expression Service Provider Program. The program provides service providers with a comprehensive solution for gene expression analysis based on the highly sensitive Expression Array System for whole genome analysis and gold-standard TaqMan Gene Expression Assays for target validation, combined with technical and promotional support from Applied Biosystems.

In its two years as a service provider, the laboratory has already worked on more than 25 research projects from Europe and the USA. The projects range from stem cell research to analysis of the impact of medicine, and are funded by several national and international bodies such as the Austrian genome research program (Gen-Au), the Austrian science fund (FWF), the Austrian central bank and the research program of the European Union.

In June, 2006, Quality Austria certified the laboratory for EN ISO/9001:2000, based on the facility’s high standard of quality and reliability, raising its international profile considerably.

“Cooperation with internationally recognized laboratories is part of our ongoing strategy to support scientific research on a global basis,” said Lars Holmkvist, president of Applied Biosystems, Europe. “The Gene Expression Service Provider Program also allows other smaller research laboratories to access the advantages of our comprehensive solution for gene expression in a cost effective manner.”

TaqMan Gene Expression Assays

Thermo Fisher Scientific

TaqMan® Gene Expression Assays are a comprehensive collection of over 1,000,000 probe and primer sets for quantitative gene expression analysis of 13 species including human, mouse, rat, Arabidopsis, Drosophila, and C. elegans genes. These assays let you quickly, easily, and affordably perform precise gene expression studies using real-time PCR. TaqMan®-based assays provide unmatched sensitivity, specificity, and reproducibility enabling data comparisons across experiments and labs. Ordering is easy. Simply search for the gene or transcript of interest using a number of public identifiers, and place the relevant assays in your basket. Reduce target discovery and validation time. Our validated bioinformatics design pipeline provides you with multiple pre-designed assays for each transcript. Universal cycling conditions eliminates the need to optimize conditions individually and enables any combination of assays to be run together. Assays are delivered in a single tube format. Just add TaqMan® Master Mix and your cDNA sample to generate accurate, reproducible, and truly quantitative gene expression data. Analyze on any Applied Biosystems Real-Time PCR System.

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Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.PCR and Thermal CyclingPolymerase chain reaction (PCR) kits and thermal cyclers are used for the in vitro amplification of DNA permitting subsequent analysis and experimental procedures. Explore a range of high-quality polymerase, primers and nucleotides or simplify your workflow with a PCR mastermix. Find reverse transcription PCR (RT-PCR) and cDNA synthesis kits for RNA products and libraries. Quantitatively measure the amplification of DNA with real-time PCR (qPCR) and droplet digital PCR (ddPCR) kits and systems, and discover automated PCR setup solutions to increase throughput. Alternative DNA amplification methods also include recombinase polymerase amplification (RPA) kits. Find the best PCR kits and thermal cyclers and purification equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Microarray AnalysisMicroarrays, also known as biochips, are used for the detection and analysis of multiple genes, proteins, antibodies, or biomarkers on a single microchip. This can reveal information on protein or gene expression, single nucleotide polymorphism (SNP), copy number variation (CNV), epigenetics and patient health in clinical diagnostic tests. Discover a range of microarray scanners and prefabricated antibody, protein, RNA and DNA microarrays for your analysis or consider creating your own custom microarrays with a microarray printer. Find the best microarray products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.RNA InterferenceRNA interference (RNAi) uses siRNA or miRNA for transcriptional silencing, gene knockdown and regulation of gene expression. RNAi requires chemical synthesis, introduction of DNA vectors into cells, an assay of RNAi effects and RNAi quantification or analysis. Consider target sequence selection, reagent preparation, controls, high specificity and effectiveness and low non-specific gene knockdown.