QIAGEN Launches Targeted RNA Panels for Next-Generation Sequencing

QIAGEN Launches Targeted RNA Panels for Next-Generation Sequencing

15 Feb 2016
Alex Waite
Editorial Assistant

Product news

QIAGEN N.V. has announced the introduction of more than 170 new QIAseq Targeted RNA Panels for gene expression profiling, expanding QIAGEN’s portfolio of Sample to Insight solutions for next-generation sequencing (NGS).

The panels enable researchers to select from over 20,000 human genes and lncRNA to survey expression fold changes and discover interactions between genes, cellular phenotypes and disease processes.

The new QIAseq Targeted RNA Panels use innovative molecular barcode technology and built-in control assays to empower researchers with true digital RNA sequencing and accurate gene expression results. Coupled with world-leading RNA isolation technologies, integrated NGS library preparation and Ingenuity® Pathway Analysis™ software, the panels provide a unique Sample to Insight solution for efficient RNA sequencing, using any NGS sequencer. Data analysis and insights are integrated into the QIAseq panels with easy-to-use, comprehensive analysis modules that require no bioinformatics expertise.

“Our QIAseq panels make RNA sequencing more accurate and reproducible with molecular barcode-based sequencing addressing the challenges posed by of low-abundance transcripts, PCR duplicates and amplification bias. These are important new tools for NGS researchers,” said Brad Crutchfield, Senior Vice President and head of QIAGEN’s Life Sciences Business Area. “QIAGEN is leading the way in providing NGS solutions to take labs from Sample to Insight.”

QIAseq Targeted RNA Panels cover an extensive range of disease- and signaling pathway-focused genes, with each panel targeting 100 to 500 genes. The content is based on the latest recommendations from relevant medical and scientific literature. The panels also can be customized to include other genes of clinical and biological interest, with flexibility to analyze from 12 to 1,000 genes simultaneously.

QIAGEN has collaborated with key leader in genomic discovery in the development of the new QIAseq panels to validate product performance in a wide range of applications, including translational and clinical research. Dr. Chris Mason, Associate Professor at Weill Cornell Medicine and one of the early users of QIAseq Targeted RNA Panels, presented application data of the new panels at the Advances in Genome Biology and Technology (AGBT) meeting in Orlando, Fla., on February 11.

QIASeq panel technology combines the flexibility and throughput of NGS with the accuracy of qPCR. The panels use only 20 nanograms of starting RNA material to analyze hundreds of genes. The molecular barcode technology, proprietary assay design algorithms and chemistry provide industry-leading specifications: >97% specificity (reads on target), >95% uniformity (bases covered by at least 20% of the mean coverage depth), and sensitivity to detect 1 RNA copy per cell for QIAseq RNA panels.

QIAGEN serves next-generation sequencing customers worldwide with solutions from Sample to Insight. The company’s sample preparation workflows, including tools for difficult challenges such as single-cell analysis and studies of microbial diversity, are the industry’s most respected. Its Enzymatics products are used in an estimated 80% of all NGS workflows. QIAGEN also provides a portfolio of NGS oncology gene panels compatible with any platform. The GeneReader NGS System was launched in late 2015 as the world's first truly Sample to Insight NGS workflow from primary sample to final report – providing a simpler, more cost-effective way for clinical testing to take advantage of NGS technology and improve outcomes.

Links

Tags

Cell Adhesion AssaysCell adhesion assays are used to quantitate attachment and analyze the molecular mechanisms for extracellular matrix adhesion, cell migration and sensitivity to inhibitors. Find the best cell adhesion assay equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.MicrobiologyMicrobiology is the study of microorganisms including protists, prokaryotes, fungi, and, often, viruses. Microorganisms are a useful research tool as genetic vectors and, in immunology, for antibiotic susceptibility testing, cellular biology and genetics. Microorganisms commonly grow readily in incubators with microbial culture media; this can contain chromogenic supplements to differentiate between cell lines. Estimate your culture’s density of microorganisms with colony counters, or screen and select colonies for desirable clones with automated colony pickers. Additionally, equipment is available to monitor environments for the presence of microbes and identify with microbial identification instruments. Find the best microbiology products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Sample ManagementSample management systems include sample storage devices such as freezers and plate storers, sample environment enclosures and sample organization, retrieval and sorter systems. Useful system features include high-throughput, automation, robotic arms, automated liquid handling and associated database systems. Accessories in sample management include barcode scanners, heat sealers and tubes.Cell-Based AssaysCell-based assays are used to monitor the presence, quantity and activities of a desired cellular analyte including drug molecules or biomarkers. This can reveal information on cell health (apoptosis, cytotoxicity, viability and proliferation assays), cell metabolism, cell migration and cell signaling mechanisms. Find the best cell-based assay products, kits and equipment with our peer reviewed product directory: compare products, check customer reviews and receiving pricing direct from manufacturers.DNA / RNA Extraction and PurificationPurified DNA and RNA are required for numerous downstream molecular biology applications. Consequently, the importance of high-quality DNA/RNA extraction and purification equipment cannot be underestimated. Many purification kits are available and are typically optimized for nucleic acid type and source, including plasmid DNA, genomic DNA, mRNA, RNA and viral nucleic acid purification kits. Automated extraction and purification of nucleic acids can be implemented with magnetic bead separator instruments or high-throughput purification workstations. Find the best DNA/RNA extraction and purification equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.DNA SequencingDNA sequencing, such as sanger sequencing, is a biological technique that determines the precise order of nucleotide bases in a fragment or template of DNA. DNA sequencers and genetic analyzers are based on capillary electrophoresis, where labeled DNA fragments are electrophoretically separated by size as they migrate through a polymer. Find the best DNA sequencing products, including DNA sequencing kits, genomic libraries and genetic identity kits in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.RNA InterferenceRNA interference (RNAi) uses siRNA or miRNA for transcriptional silencing, gene knockdown and regulation of gene expression. RNAi requires chemical synthesis, introduction of DNA vectors into cells, an assay of RNAi effects and RNAi quantification or analysis. Consider target sequence selection, reagent preparation, controls, high specificity and effectiveness and low non-specific gene knockdown.Software PlatformsSoftware platforms are useful for various stages of laboratory experiments from data collection to data storage and processing. For instance lab software is available for system control, data management, data analysis and qualification / validation.Clinical GeneticsMolecular Genetics covers the analysis of hereditary genetic disease and chromosomal abnormalities. Genetics can be analysed using DNA, RNA, and protein microarrays, PCR, RT PCR and DNA sequencing. Genetic equipment includes genetic workstations, thermal cyclers, cooling blocks and electrophoresis products. Diagnostic kits are used for DNA / RNA extraction and purification.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.RNARNA is a nucleic acid that plays a key role in gene expression and protein synthesis. It serves as a messenger between DNA and ribosomes, carrying genetic instructions to produce proteins. Advances in RNA-based therapies, such as mRNA vaccines and gene editing, have revolutionized treatment strategies for genetic disorders and infectious diseases. Explore RNA research tools and therapies in our peer-reviewed product directory; compare products, check customer reviews, and get pricing directly from manufacturers.Assay DevelopmentThe process of proving an assay to be sensitive with respect to the target is known as assay development. The assay should be able to characterize novel compounds and measure the potency of these compounds against a validated biological target.qPCRQuantitative PCR (qPCR) is a molecular biology technique used to amplify and measure the amount of a specific DNA or RNA target. It plays a crucial role in gene expression analysis, pathogen detection, and quantifying DNA or RNA in various applications. Real-time PCR provides precise, quantitative results and is widely used in research, diagnostics, and clinical studies. Browse our peer-reviewed product directory to find the best qPCR solutions; compare products, check reviews, and get pricing directly from manufacturers.Cancer DiagnosticsThere are a wide variety of diagnostic tests for cancer available, and this range continues to expand as our knowledge of cancer improves. Current diagnostic methods include biopsy, imaging and blood tests for known biomarkers. New methods in research development include liquid biopsies and cancer breathalyzers.
QIAGEN Launches Targeted RNA Panels for Next-Generation Sequencing