OGT Announces New Targeted Next Generation Sequencing Service

30 May 2011
bridget bridget
Laboratory Director

Product news

Oxford Gene Technology (OGT), provider of innovative clinical genetics and diagnostic solutions to advance molecular medicine, has today announced the release of its next generation targeted sequencing service. With an emphasis on flexibility, expert project design and advanced data analysis, the new offering takes advantage of OGT’s high-quality processes and in-house bioinformatics experience to provide the most complete targeted sequencing solution available.

This includes whole exome sequencing, as well as custom targeted sequencing of any genomic region of interest. OGT adds value at every stage of a project, from initial experiment design through to providing clear results. This new service makes it easy for all researchers to obtain the benefits of next generation sequencing (NGS), without the need for extensive technical knowledge, equipment or bioinformatics resource. By combining OGT’s microarray capabilities and sequencing offering, OGT’s Genefficiency™ Genomic Services now offer the most complete genomic research solution available.

OGT’s Chief Executive Officer, Dr Mike Evans, commented: “We are very excited to add targeted sequencing to our established Genefficiency brand of genomic services. By going beyond the basic analysis routinely produced by most sequencing platforms and service providers, our new offering delivers clear, prioritised results that researchers can use immediately, without having to wade through vast numbers of raw sequence files. The availability of our custom targeted sequencing service further expands the possibilities available, allowing us to work with our clients to design the best approach to meet their specific needs.”

The planning of an NGS experiment is a complex process, with many critical components to consider including protocol choice, library design, capture method, instrumentation and coverage. Optimisation of these steps is essential for generating accurate, insightful data. As a world leading provider of genomic services, OGT’s expertise and dedication to quality control at every stage helps to ensure that each study yields meaningful, reliable results. At the centre of this approach is a commitment to understanding the specific project goals and delivering the optimal solution for successful results. This includes whole exome sequencing, as well as custom approaches using computationally enhanced capture probes designed to a user’s specification by OGT experts.
The average NGS experiment generates several hundred megabases of sequence, which can be a serious obstacle to researchers in terms of data management, storage and analysis. To meet this challenge, OGT’s in-house bioinformatics team perform all the standard alignment and quality control processing that maximises data quality, as well as additional intelligent filtering of the information, a feature unique to OGT’s Genefficiency service. OGT’s entry offering provides results as a user-friendly HTML report that places features such as insertions, deletions and single nucleotide polymorphisms into context.

This includes the identification of affected genes and proteins, possible disease associations and links to external databases. OGT’s ‘advanced’ and ‘expert’ services provide an even greater depth of analysis, for instance multi-genome comparison; the exclusion of variants from a baseline genome; identification of variants shared by all affected samples; and bespoke meta- or focused-analysis.

For more information about OGT’s new Genefficiency sequencing services visit the company article page.

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Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.ProteomicsProteomics is the systemic bioinformatics study of proteins and amino acids, including their structure, size, function and identification. Tools used in proteomics include chromatography, blotting and gels, protein arrays, mass spectrometry and ELISA and associated analysis software. Analyzers and proteomic systems should be sensitive, high resolution, fast and may be automated for high-throughput.Data AnalysisData analysis hardware and software is available to make data processing straight-forward yet powerful. Data software can be used for math and stats, technical graphing and image analysis. In addition, software is available for specific data analysis of electrophoresis, densitometry, ELISA and DNA sequencing.Labware and Lab SuppliesLabware and lab supplies include various forms of glassware, plasticware, reagents and personal protective equipment (PPE) and are used across all scientific laboratories, enabling daily tasks to be performed. Explore a range of flasks and beakers, petri dishes, carboys and storage bottles. Labware such as condensers, desiccators and burettes are also available for more specific tasks. Find the best labware and lab supplies in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Chem / BioinformaticsCheminformatics and bioinformatics are computational techniques used in chemistry and biology, respectively, for data acquisition, processing and storage. Cheminformatics focuses on compound information, whereas bioinformatics is mainly applied to analysis and modeling of genomics, genetic and sequencing information. Hardware and software is available for data acquisition, analysis, management and storage.DNA / RNA Extraction and PurificationPurified DNA and RNA are required for numerous downstream molecular biology applications. Consequently, the importance of high-quality DNA/RNA extraction and purification equipment cannot be underestimated. Many purification kits are available and are typically optimized for nucleic acid type and source, including plasmid DNA, genomic DNA, mRNA, RNA and viral nucleic acid purification kits. Automated extraction and purification of nucleic acids can be implemented with magnetic bead separator instruments or high-throughput purification workstations. 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