NextGen Sciences and Expression Pathology to provide protein biomarker discovery and measurement in tissue

30 Jun 2008

Product news

NextGen Sciences, Inc (Ann Arbor, MI), a provider of biomarker services, and Expression Pathology, Inc. (Gaithersburg, MD), a leader in tissue protein analysis, announced today that they have signed a commercial agreement to provide protein biomarker services in formalin-fixed paraffin-embedded (FFPE) tissue samples.

The new combined offering will provide researchers with an improved, mass spectrometry based alternative to the commonly used immunohistochemistry method for identification and analysis of tissue proteins, reducing drug development timelines and providing accurate and quantitative measurement of protein biomarkers of disease progression, drug response and toxicity.

In addition to providing true quantitative protein analysis in FFPE tissue, which is not possible with current methods, the new services are expected to save months in the drug development process. Immunohistochemistry is laborious and often require several months for the production of an antibody against the protein of interest. However, the projects run by NextGen and Expression Pathology take less time to complete and do not require antibodies for protein quantitation.

To access the services, customers can send their FFPE tissue samples to either NextGen or Expression Pathology. Expression Pathology has developed innovative, proprietary techniques for microdissection, extraction and solubilization of the protein content of FFPE tissue. Customer samples are processed using the Company’s Liquid Tissue® MS Protein Prep and Director™ laser micro-dissection technologies. Once extracted, the proteins are analyzed with NextGen’s LC-MS/MS technologies to identify and quantify protein levels from healthy versus diseased or treated versus untreated samples. This workflow can be used at any stage of a project including biomarker discovery, biomarker assay development and biomarker testing. For discovery, the deliverable is a list of candidate protein biomarkers identified and quantified in each tissue sample. For biomarker testing, the deliverable is relative and/or absolute quantitation for the client’s targeted list of protein biomarkers. See notes to editor for more technical details

Dr. Mike Pisano, President of NextGen, said: “Our combined services will aid in the most challenging task of selecting the appropriate biomarkers for specific drug development programs. This agreement extends our biomarkerexpress™ service portfolio, and underlines our commitment to enable biopharma customers to select the best biomarkers for each Research and Development program, and for use in personalized medicine.”

Casey Eitner, President and CEO of Expression Pathology, commented: “These services provide our customers, for the first time, accurate and quantitative measurement of protein expression levels in FFPE tissue, improving the effectiveness and reducing time limes in drug development.”

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Cell / Tissue CultureCell culture or tissue culture is used to study the biology of cells or tissues and to isolate cellular products in an environment which can be manipulated and well defined. Accurately control your culture environment with bioreactors or culture incubators, bind your cells to a surface or together with an extracellular matrix. Distinguish cell types with differential media or proliferate cells with certain characteristics using selective media. Enrich your media with supplements such as growth factors, sera and vitamins. Find the best cell and tissue culture products, kits and equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.ProteomicsProteomics is the systemic bioinformatics study of proteins and amino acids, including their structure, size, function and identification. Tools used in proteomics include chromatography, blotting and gels, protein arrays, mass spectrometry and ELISA and associated analysis software. Analyzers and proteomic systems should be sensitive, high resolution, fast and may be automated for high-throughput.Cellular PathologyCellular Pathology deals with the microscopic analysis of tissue samples and cells. Sample preparation and processing includes fixation, staining, sectioning and slide mounting, using equipment such microtomes and cryostats. In choosing immunohistochemistry and immunocytochemistry kits, consider chromogens, staining method, antibodies, microscopes and imaging.Cell-Based AssaysCell-based assays are used to monitor the presence, quantity and activities of a desired cellular analyte including drug molecules or biomarkers. This can reveal information on cell health (apoptosis, cytotoxicity, viability and proliferation assays), cell metabolism, cell migration and cell signaling mechanisms. Find the best cell-based assay products, kits and equipment with our peer reviewed product directory: compare products, check customer reviews and receiving pricing direct from manufacturers.BiomarkersBiomarkers are biological markers which can be measured and evaluated to indicate a biological state. The use of biomarkers in research and diagnosis can indicate a normal or disease state or drug response of cells / tissues. Biomarkers include genetic markers, cell surface markers such as antigens, antibodies or receptors and secreted molecules such as cytokines. An assay system is required for identification of biomarkers. :
NextGen Sciences and Expression Pathology to provide protein biomarker discovery and measurement in tissue