New Methods Automate Gene Expression Sample Prep

27 Aug 2006

Product news

Beckman Coulter, Inc. introduces Biomek® 3000 GeXP Methods for automated gene expression sample preparation. This new software plug-in provides methods to prepare samples for the GenomeLab™ GeXP Genetic Analysis system on the Biomek 3000 Liquid Handling Workstation.

The suite includes fully validated methods for RNA sample prep, quantitation and normalization and reaction setup. When used together, the Biomek 3000 workstation and these validated methods along with the GeXP Genetic Analysis system deliver a complete solution for gene expression analysis, from sample to answer.

The new Biomek 3000 GeXP Methods replace manual configurations for increased throughput, enabling the processing of 96 samples in less than four hours. The automated sample prep component incorporates the Agencourt® RNAdvance Cell chemistry, based on SPRI® (Solid Phase Reversible Immobilization) paramagnetic bead-based nucleic acid purification technology.

“This validated methods suite, the first in a series of GenomeLab applications we will roll out over the coming months, represents our focus on simplifying and automating total processes for our customers,” explained Noreen Galvin, director of life science laboratory automation for Beckman Coulter. “No other company has linked these functions to give researchers a ‘click and go’ process with minimal intervention.”

GenomeLab GeXP delivers more genes per reaction and more samples per run than real-time PCR*, removing bottlenecks in gene expression studies for drug discovery and development research. The system’s patented priming strategy overcomes the biases that limit standard multiplexed PCR analysis to just a few genes at a time.

*The PCR process is covered by patents owned by Roche Molecular Systems and F. Hoffman-La Roche Ltd.

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Sample PreparationSample preparation can improve the quality and speed of separation techniques. Products to assist sample preparation include filtration equipment, evaporators, membranes and sieves.Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.Lab-on-a-ChipLab-on-a-chip (LOC) technology uses microfluidic chips, such as microarrays, to perform biochemical assays on a small scale. Benefits of lab-on-a-chip include the small volume of sample required as well as the speed of analysis. In selecting lab-on-a-chip devices consider the assay, cost, reliability, sensitivity and signal to noise ratio.PCR and Thermal CyclingPolymerase chain reaction (PCR) kits and thermal cyclers are used for the in vitro amplification of DNA permitting subsequent analysis and experimental procedures. Explore a range of high-quality polymerase, primers and nucleotides or simplify your workflow with a PCR mastermix. Find reverse transcription PCR (RT-PCR) and cDNA synthesis kits for RNA products and libraries. Quantitatively measure the amplification of DNA with real-time PCR (qPCR) and droplet digital PCR (ddPCR) kits and systems, and discover automated PCR setup solutions to increase throughput. Alternative DNA amplification methods also include recombinase polymerase amplification (RPA) kits. Find the best PCR kits and thermal cyclers and purification equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.