LifeTech TaqMan Integrates with Genedata Expressionist for Genomic Profiling

26 Nov 2012

Product news

Genedata announced a partnership with Life Technologies Corporation designed to create a streamlined ecosystem that empowers researchers in both academic and commercial settings to accelerate discovery and validation experiments. As part of the collaboration, Genedata will integrate Life Technologies’ online store with the Genedata biomarker discovery platforms Genedata Expressionist® for Genomic Profiling and Genedata Analyst - enabling users to easily purchase TaqMan® real-time PCR assays specific to their next generation sequencing (NGS) data.

Within the Genedata/LifeTechnologies workflow, Genedata solutions process and analyze data and when marker candidates are identified, users seamlessly connect to the Life Technologies’ online store for TaqMan® Assay purchase. With a couple of clicks, PCR assays are selected and ordered for all marker candidates. Upon receipt of PCR assays, users can validate experiments in an integrative manner by loading the raw PCR data directly into the same session that was used for identifying marker candidates.

“Life Technologies and Genedata share a common goal of advancing research and facilitating scientific discovery,” said Chris Linthwaite, Head of Genetic Analysis at Life Technologies. “Integration of our complementary technologies serves that mission by providing researchers quick access to the most appropriate TaqMan assays to validate data from their NGS experiments.”

Thriving on large and complex experimental data sets, Genedata Expressionist for Genomic Profiling is easily integrated into existing research environments. The direct interface with TaqMan® real-time PCR assays is available for a variety of applications, including DNA-, RNA, Chip-, and Methyl-Seq, SNP genotyping, and copy number analysis.

“Our collaboration with Life Technologies reflects our vision to enrich the research experience for our customers with innovative solutions that also drive down costs with time-saving workflows,” noted Dr. Othmar Pfannes, CEO of Genedata. “With Genedata Expressionist, researchers have the power of rich statistical and visualization tools to analyze NGS data, and these capabilities are now complemented with real-time PCR to quickly validate genomic experiments.”

Links

Tags

Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.PCR and Thermal CyclingPolymerase chain reaction (PCR) kits and thermal cyclers are used for the in vitro amplification of DNA permitting subsequent analysis and experimental procedures. Explore a range of high-quality polymerase, primers and nucleotides or simplify your workflow with a PCR mastermix. Find reverse transcription PCR (RT-PCR) and cDNA synthesis kits for RNA products and libraries. Quantitatively measure the amplification of DNA with real-time PCR (qPCR) and droplet digital PCR (ddPCR) kits and systems, and discover automated PCR setup solutions to increase throughput. Alternative DNA amplification methods also include recombinase polymerase amplification (RPA) kits. Find the best PCR kits and thermal cyclers and purification equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Data AnalysisData analysis hardware and software is available to make data processing straight-forward yet powerful. Data software can be used for math and stats, technical graphing and image analysis. In addition, software is available for specific data analysis of electrophoresis, densitometry, ELISA and DNA sequencing.SNPs TechnologySingle nucleotide polymorphisms (SNPs) are individual base variations in a DNA sequence. SNPs are used in research to study predispositions to disease and drug discovery. Products for studying single nucleotide polymorphisms include SNP arrays and detection systems to detect polymorphisms, SNP typing systems for genotyping DNA, and PCR to amplify specific SNPs.DNA SequencingDNA sequencing, such as sanger sequencing, is a biological technique that determines the precise order of nucleotide bases in a fragment or template of DNA. DNA sequencers and genetic analyzers are based on capillary electrophoresis, where labeled DNA fragments are electrophoretically separated by size as they migrate through a polymer. Find the best DNA sequencing products, including DNA sequencing kits, genomic libraries and genetic identity kits in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Gene Expression and Molecular CloningMolecular cloning is a set of techniques that utilizes vectors to transfer recombinant DNA into host cells and is an essential tool for investigating the expression of genes and proteins in bacterial or mammalian cells. A variety of vectors optimized for gene cloning and expression in a range of host organisms are available, alongside competent cells for genetic replication. Here, you can explore a range of molecular tools, high-quality genomic and cDNA libraries, premade clones, transformation and transfection reagents and mutagenesis or gene expression detection assays and expression arrays. Find the best gene expression and molecular cloning products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.qPCRQuantitative PCR (qPCR) is a molecular biology technique used to amplify and measure the amount of a specific DNA or RNA target. It plays a crucial role in gene expression analysis, pathogen detection, and quantifying DNA or RNA in various applications. Real-time PCR provides precise, quantitative results and is widely used in research, diagnostics, and clinical studies. Browse our peer-reviewed product directory to find the best qPCR solutions; compare products, check reviews, and get pricing directly from manufacturers.NGS SoftwareBiomarker DiscoveryClinical biomarkers refer to substances related to known medical conditions that can be accurately measured <i>in vitro</i>. Biomarkers can be used to diagnose presence of a disease and indicate disease severity. The discovery of new biomarkers is incredibly valuable in the field of diagnostics.ChIP-SequencingRNA-SeqRNA sequencing (RNA-seq) is a next-generation sequencing technique used to analyze the transcriptome, providing insights into gene expression and regulation. This method is essential for genomics, disease research, and personalized medicine. Explore RNA-seq tools in our peer-reviewed product directory; compare products, check reviews, and get pricing directly from manufacturers.MethylationSNP GenotypingCopy Number Variation