Integrated DNA Technologies Launches xGen® Universal Blocking Oligos

21 Nov 2013
Sarah Thomas
Associate Editor

Product news

Integrated DNA Technologies (IDT), the world leader in oligonucleotide synthesis, has launched the latest addition to its portfolio of next generation sequencing (NGS) products, xGen® Universal Blocking Oligos. By incorporating these oligos into target capture experiments, users can decrease the complexity and increase throughput of their target capture experiment without degradation of performance.

Blocking oligos are commonly used to enhance the performance of capture experiments, through the prevention of cross-hybridization between adapter sequences. Adapters ligated to the DNA library before enrichment can hybridize to each other and cause an increase in off-target reads. Blocking oligos bind to these adapters to prevent non-specific binding. However, when multiple samples are processed simultaneously, each adapter requires a unique blocking oligo, increasing the complexity of the experiment. xGen Universal Blocking Oligos are able to bind to all indexed adapters using a single oligonucleotide sequence, removing the need for multiple oligos. As a result, researchers can more readily multiplex their experiments for cost-effective enrichment of 1000s of samples.

Universal Blocking Oligos join xGen Lockdown® Probes, which are individually synthesized 60120 nucleotide 5’-biotinylated capture oligos, as part of a growing offering of NGS products. Each probe is designed to enable high depth sequencing and analysis of specific regions of the genome. Whether used with custom capture panels, or for supplementing existing panels, xGen Lockdown Probes provide approximately 5000-fold enrichment, with high coverage over targeted regions and minimal GC bias.

xGen Target Capture products are ideal for users who want to focus on relevant genomic regions or transcripts of interest, or to detect single nucleotide polymorphisms, insertions/deletions, and other genetic variants using NGS.

Links

Tags

OligonucleotidesOligonucleotides are small nucleic acid polymers, usually less than 20 bases in length. Oligonucleotides can be made via enzymatic cleavage or more commonly by chemical synthesis with polymerases. Their use includes FISH, southern blots, microarrays and as primers in PCR. High fidelity synthesis kits and detection systems are available for easy production and detection, respectively.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.NGS