Hamilton Robotics Partners with Coastal Genomics to Introduce Innovative Technologies to Automate Agarose Gel DNA Fragment Selection

20 Jan 2014
Sarah Thomas
Associate Editor

Product news

At the annual Society for Laboratory Automation and Screening (SLAS) meeting Hamilton Robotics has announced a partnership with Coastal Genomics to launch the new Microlab® NIMBUS® Select workstation with Ranger Technology. The new automated workstation provides a faster and more economical automated solution to agarose gel selection of DNA fragments, generating high-quality material for downstream use in next-generation sequencing (NGS), cloning and gene synthesis applications.

The partnership with Coastal Genomics has enabled Hamilton Robotics to access an innovative technology, validated at one of the world’s largest genome centers, and expands the applications available on the NIMBUS workstation. Ranger Technology targets DNA and isolates fractions with high sensitivity and accuracy; recovery yields typically exceed 80% of the intrinsic content in the targeted range.

“The workstation offers high quality, gel-based size selection at a scale that meets the demands of any lab," explained Matthew Nesbitt, President of Coastal Genomics. "However, it also generates analytics that can be used to assess the input sample both before and after the size selection event. This feature could consolidate multiple processes into a single run with Ranger Technology.”

Agarose gel size selection is a key component in sample preparation and quality control used throughout the life sciences. By automating pipetting steps, the NIMBUS Select Workstation with Ranger Technology eliminates manual gel preparation, which is considered one of the most labor-intensive and error-prone steps. In an average two-hour run, the workstation can accurately process up to 96 samples and then place the fragments in destination labware.

Coastal Genomics’ technology has been successfully validated to size select thousands of DNA samples processed by a major scientific research center in British Columbia. The center has effectively eliminated manual agarose gel size selection for multiple sequencing protocols for sample types involving microRNA, genomic DNA and formalin-fixed paraffin-embedded (FFPE) tissue.

The NIMBUS Select Workstation with Ranger Technology offers numerous performance and quality control benefits over manual processing and other automated platforms. As an open automation platform, the workstation can be used for many applications and works with multiple NGS instrument manufacturers. The NIMBUS instrument's 96-channel CO-RE head provides an unmatched pipetting dynamic range of 1µL to 1,000µL.

Because sample processing does not always come in precise 96-sample batches, the workstation has the built-in flexibility to automate workflows from one to 96 samples at a time. Quality control metrics, including individual gel images and electropherogram traces, are captured for each sample.

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Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.DNA / RNA Extraction and PurificationPurified DNA and RNA are required for numerous downstream molecular biology applications. Consequently, the importance of high-quality DNA/RNA extraction and purification equipment cannot be underestimated. Many purification kits are available and are typically optimized for nucleic acid type and source, including plasmid DNA, genomic DNA, mRNA, RNA and viral nucleic acid purification kits. Automated extraction and purification of nucleic acids can be implemented with magnetic bead separator instruments or high-throughput purification workstations. Find the best DNA/RNA extraction and purification equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Robotic InstrumentsRobotic instruments can be used for high-throughput automation of many lab processes. Such processes use instruments for assays like cell based assays and ELISA, for sample preparation like shakers, centrifuges and incubators, and for analysis such as sequencing and western blot analyzers. Useful features of robotic instruments include speed, reproducibility, barcode readers, software and automation.Robotic WorkstationsRobotic workstations are automated platforms enabling the user to perform high-throughput, multi-application processes, from sample preparation tasks such as PCR set-up, DNA purification and NGS library preparation, to integrated sample prep and analysis workstations. Automation makes processes consistent, fast, precise and fully walk-away. Find the best robotic workstations in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Automated Liquid HandlingAutomated liquid handling equipment is used to mix, dilute and dispense allotted volumes of liquid into microplates and other vessels automatically. The robotic, liquid handling arms can dispense from single channel to 3456 multichannel as well as operate nanoliter dispensing, enabling high throughput of samples. Find the best automated liquid handlers in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.SLASThe Society for Laboratory Automation and Screening (SLAS) is an organization focused on laboratory automation, high-throughput screening, and biotechnology innovation. SLAS promotes scientific advancements through conferences, publications, and industry collaborations. AutomationAutomation in laboratories and manufacturing processes enhances efficiency, precision, and scalability by reducing the need for manual intervention. It plays a critical role in improving productivity, minimizing human error, and accelerating workflows in fields like diagnostics, drug development, and industrial testing. Automation technologies include robotic systems, automated liquid handlers, and process control systems that streamline complex tasks and ensure consistent, reproducible results. Explore our peer-reviewed product directory to discover the best automation solutions, compare options, read user reviews, and get prices directly from manufacturers.DNA Fragment Sizing