DNAnexus Partners With QIAGEN to Integrate Its Cloud Genomics Platform With Ingenuity Variant Analysis

Cloud genomics platform facilitates end-to-end solution for clinical research

8 Oct 2015
Lois Manton-O'Byrne, PhD
Executive Editor

Industry news

DNAnexus Inc., the leader in cloud-based genome informatics and data management, today announced that QIAGEN, a leading global provider of Sample to Insight solutions to transform biological materials into valuable molecular insights, has integrated the DNAnexus cloud genomics platform with Ingenuity Variant Analysis, QIAGEN’s leading variant interpretation solution. Researchers globally now have the ability to choose a sequencer independent, cloud-based solution for analyzing and interpreting their NGS data by uploading raw sequencing data into the scalable DNAnexus cloud platform and seamlessly generating uniquely actionable biological insights through QIAGEN’s Ingenuity Variant Analysis.

“Adoption of QIAGEN’s universal bioinformatics solutions is growing rapidly as NGS becomes the norm for translational research in cancer and other diseases,” said Dr. Frank Schacherer, Vice President Discovery Genomics at QIAGEN. “The HIPAA-compliant DNAnexus Platform provides seamless and secure integration from the sequencer to QIAGEN bioinformatics tools where disease-focused researchers now have a complete solution to move rapidly from raw data to valuable insights.”

Ingenuity Variant Analysis leverages expert, manually-curated literature and powerful Path-to-Phenotype™ capabilities to relate biological phenotype with human variation data. The DNAnexus Platform enables QIAGEN to run best practices secondary analysis in the cloud, providing a secure, reproducible, cost-effective, and scalable solution. In addition, the DNAnexus export tool enables customers to securely transfer variant data into QIAGEN’s Ingenuity platform automatically for downstream analysis, including annotation, interpretation, and variant reporting.

Furthermore, while exploring variants inside of Variant Analysis, researchers can easily refer back to supporting information such as the mapped reads found in a BAM file on DNAnexus, and view this data along with the variant data inside of a genome browser. This integrated solution allows researchers to rapidly identify, prioritize, and validate the most promising variants for follow-up. Dr. Schacherer will be in attendance at this year’s American Society for Human Genetics in Baltimore to further discuss details of the partnership to Society members.

“The DNAnexus Platform is becoming the go-to solution for data interpretation tool providers who are seeking a secure, compliant, and scalable environment on which they can deploy and expand their product offerings,” said Richard Daly, CEO of DNAnexus. “We are proud of the collaboration with QIAGEN, which allows clinical researchers to move seamlessly between the two environments providing a powerful new end-to-end analytical solution for genomic biomarker discovery and interpretation.”

By providing the global network for genomic medicine, DNAnexus is removing barriers to genomic insight; whether those barriers are geographic boundaries that hinder collaborating across national borders, disparate organizations sharing and analyzing data together, or financial barriers for customers not looking to invest in additional IT infrastructure.

Links

Tags

Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.DNA SequencingDNA sequencing, such as sanger sequencing, is a biological technique that determines the precise order of nucleotide bases in a fragment or template of DNA. DNA sequencers and genetic analyzers are based on capillary electrophoresis, where labeled DNA fragments are electrophoretically separated by size as they migrate through a polymer. Find the best DNA sequencing products, including DNA sequencing kits, genomic libraries and genetic identity kits in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Gene Expression and Molecular CloningMolecular cloning is a set of techniques that utilizes vectors to transfer recombinant DNA into host cells and is an essential tool for investigating the expression of genes and proteins in bacterial or mammalian cells. A variety of vectors optimized for gene cloning and expression in a range of host organisms are available, alongside competent cells for genetic replication. Here, you can explore a range of molecular tools, high-quality genomic and cDNA libraries, premade clones, transformation and transfection reagents and mutagenesis or gene expression detection assays and expression arrays. Find the best gene expression and molecular cloning products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Clinical GeneticsMolecular Genetics covers the analysis of hereditary genetic disease and chromosomal abnormalities. Genetics can be analysed using DNA, RNA, and protein microarrays, PCR, RT PCR and DNA sequencing. Genetic equipment includes genetic workstations, thermal cyclers, cooling blocks and electrophoresis products. Diagnostic kits are used for DNA / RNA extraction and purification.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Chem / BioinformaticsCheminformatics and bioinformatics are computational techniques used in chemistry and biology, respectively, for data acquisition, processing and storage. Cheminformatics focuses on compound information, whereas bioinformatics is mainly applied to analysis and modeling of genomics, genetic and sequencing information. Hardware and software is available for data acquisition, analysis, management and storage.Translational ResearchData ManagementGenome SequencingGenome sequencing involves determining the complete DNA sequence of an organism's genome. It provides crucial information about genetic variations, mutations, and diseases. Advances in sequencing technologies, such as next-generation sequencing (NGS), have accelerated research in genomics, diagnostics, and personalized medicine. Explore genome sequencing tools in our peer-reviewed product directory; compare products, check reviews, and get pricing directly from manufacturers.Genetic VariationASHGCancer ResearchAlthough cancer is often referred to as a single condition, it actually consists of more than 100 different diseases. Microscopy, mass spectrometry, high throughput sequencing and flow cytometry are some of the most common techniques employed in cancer research labs.