Discover the Latest NGS-Based Assays Guiding Precision Oncology: IDT joins forces with Foundation Medicine in AMP workshop

11 Nov 2014
Sarah Thomas
Associate Editor

Industry news

At this year’s Association of Molecular Pathology (AMP) meeting, Integrated DNA Technologies (IDT) and Foundation Medicine will explore how nucleic acid innovations are advancing NGS-based diagnostics to improve cancer care. Their joint Corporate Workshop (November 12, 11 am, Maryland Ballroom D) will demonstrate the application of IDT’s target enrichment products and expertise in Foundation Medicine’s cutting-edge, high performance NGS-based assays for accurate and comprehensive cancer genomic profiling. These assays identify targeted treatment options for patients with solid tumors and hematologic malignancies.

Applications that enable clinical research form a major part of IDT’s focus. IDT’s xGen® Lockdown® Probes and Panels enhance target enrichment and allow flexibility in NGS-based assay optimization, while achieving excellent uniformity with virtually no GC bias. The range of custom capture probe panels for targeted NGS can be tailored to cover a wide range of diseases. Dr John Havens, Vice President, Business Development at IDT, will demonstrate IDT’s role in advancing human health during his talk, entitled, “IDT Nucleic Acid Products for Clinical Research and Diagnostics”. Attendees will discover new opportunities for their research and learn how these innovations have been applied in cancer research.

Foundation Medicine is leading a transformation in cancer care, where each patient’s treatment is informed by a deep understanding of the molecular changes that contribute to their disease. The company has applied NGS to develop and validate robust, sensitive comprehensive genomic profiles that detect all classes of genomic alterations in routine clinical FFPE samples, peripheral whole blood, and bone marrow aspirate. In his talk, entitled, “Building an NGS-Based Platform for Clinical Cancer Care”, Dr Geoff Otto, Director of Molecular Biology and Sequencing at Foundation Medicine, will discuss Foundation Medicine’s comprehensive genomic profiles. These CLIA-certified, CAP-accredited, and NYSDOH-approved tests rely on solution hybrid capture of the coding regions and select intronic regions of hundreds of cancer-related genes. Dr Otto will demonstrate how comprehensive genomic profiling guides selection of targeted therapies and present the successful application of Foundation Medicine’s tests to more than 15,000 patient samples.

The AMP 2014 Annual Meeting (November 12–15, National Harbor, MD, USA) comprises a broad program that encourages inspiring dialogue and discussion among attendees. The theme for this meeting is "Realizing the Dream of Precision Medicine". The collaboration between IDT and Foundation Medicine embraces this goal, delivering NGS technologies that have real-world benefits in the clinic.

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Clinical GeneticsMolecular Genetics covers the analysis of hereditary genetic disease and chromosomal abnormalities. Genetics can be analysed using DNA, RNA, and protein microarrays, PCR, RT PCR and DNA sequencing. Genetic equipment includes genetic workstations, thermal cyclers, cooling blocks and electrophoresis products. Diagnostic kits are used for DNA / RNA extraction and purification.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Clinical NGSNext Generation Sequencing (NGS) refers to the use of massive parallel sequencing of multiple small fragments of DNA. This high-throughput genomic analysis yields enormous amounts of sequence data, which if appropriately analyzed could have huge potential for clinical laboratories. For this to happen there are technique and bioinformatic hurdles to be overcome.Cancer DiagnosticsThere are a wide variety of diagnostic tests for cancer available, and this range continues to expand as our knowledge of cancer improves. Current diagnostic methods include biopsy, imaging and blood tests for known biomarkers. New methods in research development include liquid biopsies and cancer breathalyzers.
Discover the Latest NGS-Based Assays Guiding Precision Oncology: IDT joins forces with Foundation Medicine in AMP workshop