deltaDOT announces the launch of Merlin, a capillary-based DNA sequencer providing a major step forward in low-cost rapid-throughput DNA sequencing

4 Jun 2006
Kerry Parker
CEO

Product news

deltaDOT Ltd, a developer of highly innovative enabling technologies and products for bioscience research, launched its Merlin capillary-based DNA sequencer at the Human Genome Meeting in Helsinki, Finland. Merlin incorporates advanced imaging technology developed by the Company to enable label-free rapid throughput sequencing at low cost.

Conventional DNA sequencing systems rely on the use of labels attached to the molecules in order to detect the presence of nucleic acids making up the DNA sequence. However, by incorporating deltaDOT’s Label Free Intrinsic Imaging™ technology (LFII™), Merlin is able to monitor unlabelled biomolecules directly, in real time.

LFII™ works by using many hundreds of UV detectors to image the biomolecules as they traverse the capillary electrophoresis (CE) system. Merlin, which is a short-read (c. 200-300 base pairs) CE DNA sequencer, applies LFII™ to the separation stage of nucleic acid sequencing, eliminating the need to label the molecules, saving both time and costs. The advanced system incorporates signal processing and data mining tools to separate and identify unlabelled biomolecules, providing unprecedented resolution, sensitivity and reproducibility of analysis.

Merlin was developed by deltaDOT for short turnaround, inexpensive applications, where the top-of-the-line DNA sequencers are not as cost-effective or efficient to use. However, the system also has potential for application in forensic science laboratories.

“Having achieved the resolution necessary to resolve DNA sequence information, we have been working with an internationally renowned forensic science provider to apply Merlin to the analysis of Short Tandem Repeats (STRs). STRs have become popular DNA markers because the number of repeats can be highly variable among individuals, making STRs highly effective for human identification purposes.

On-site forensic analysis is currently hampered by instrument size and consumable needs. However, the use of Merlin will, for the first time, allow the development of portable field based forensic systems, indicating that our LFIITM technology will play an important role in field based forensic analysis in the next decade.” Explained Dr Stuart Hassard, Co-founder and Head Biologist of deltaDOT.

Dr Anthony Baxter, CEO of deltaDOT, commented: “Merlin has been developed to deliver accurate results rapidly at a tiny fraction of the running costs of standard sequencers. The use of LFIITM for DNA sequencing provides a crucial advantage as it avoids the need for highly expensive labelling reagents, thereby saving users up to thousands of dollars a day.”

Merlin is the second product to be developed by deltaDOT using the company’s LFIITM technology. Peregrine, which is a bench-top system, was developed by deltaDOT for the label-free analysis of DNA, proteins, bacteria, virus and small molecules.

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Capillary ElectrophoresisCapillary electrophoresis (CE) is used to separate molecules based on charge, size and hydrophobicity. Pressure, voltage or a vacuum is used to introduce the sample to fused silica capillaries. Fluorescence, UV/Vis, UV or diode array detectors are used to visualize components. Types of CE systems include capillary electrochromatography (CEC), capillary zone electrophoresis and capillary gel electrophoresis. Find the best capillary electrophoresis equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Data MiningData mining is an important process for extracting information, patterns and trends from data. Data mining software, databases, reference materials and storage packages are available to process lab data.Molecular Recognition SoftwareMolecular recognition software is widely used to analyze DNA, RNA, proteins and chemicals. The software can be useful for graphical viewing, comparative analyses, high-throughput screening, genomics, proteomics and phylogenetics. Molecular recognition software uses bioinformatics tools and analyses such as BLAST searches and generates structural predictions, 3D structures and sequencing information.Cell-Based AssaysCell-based assays are used to monitor the presence, quantity and activities of a desired cellular analyte including drug molecules or biomarkers. This can reveal information on cell health (apoptosis, cytotoxicity, viability and proliferation assays), cell metabolism, cell migration and cell signaling mechanisms. Find the best cell-based assay products, kits and equipment with our peer reviewed product directory: compare products, check customer reviews and receiving pricing direct from manufacturers.DNA SequencingDNA sequencing, such as sanger sequencing, is a biological technique that determines the precise order of nucleotide bases in a fragment or template of DNA. DNA sequencers and genetic analyzers are based on capillary electrophoresis, where labeled DNA fragments are electrophoretically separated by size as they migrate through a polymer. Find the best DNA sequencing products, including DNA sequencing kits, genomic libraries and genetic identity kits in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.
deltaDOT announces the launch of Merlin, a capillary-based DNA sequencer providing a major step forward in low-cost rapid-throughput DNA sequencing