Bitplane Makes the IMS File Format Open Source

12 Aug 2015
Lois Manton-O'Byrne, PhD
Executive Editor

Industry news

Bitplane, an Oxford Instruments Company and world leader in 2 to 4D image visualization, analysis and interpretation, today announced that its proprietary IMS file format would become Open Source.

The IMS file format is based on Hierarchical Data Format (HDF5), which is designed to work with huge multidimensional data and is optimized to allow extremely fast visualization of huge volume data. To facilitate this, the format stores not only the original image data but also lower resolution versions of the original data. This allows the visualization software to load the resolutions which match those of the screen.

For the purpose of fast rendering, the Imaris File Format stores the image data in contiguous 3D chunks (or blocks), which enables the software to load only the data that is in the field of view. The multiresolution structure and the chunk-wise storage layout are the cornerstones of this high performance IMS file format for big datasets.

The IMS file format has been enabling Imaris users to work with huge data sets since 2006. Over the last nine years Bitplane has continuously improved IMS to ensure optimum performance and now in 2015 has moved to Open Source so that the image analysis and microscopy community can fully benefit from its capabilities. With the advantage of light sheet microscopy and large chip sCMOS/EMCCD cameras, microscopists frequently generate several hundreds of gigabytes of 3D data per experiment.

By making IMS Open Source we aim to work with the microscopy community to solve one of the most challenging bottlenecks of the early 21st century.

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Data AnalysisData analysis hardware and software is available to make data processing straight-forward yet powerful. Data software can be used for math and stats, technical graphing and image analysis. In addition, software is available for specific data analysis of electrophoresis, densitometry, ELISA and DNA sequencing.Light MicroscopyLight microscopes or optical microscopes are used to visualize microscale objects under magnification, including cells, clinical specimens and materials. Lab equipment for light microscopy includes confocal microscopes, fluorescence microscopes, zoom and stereo microscopes. Microscope slides and imaging reagents are available for visualizing samples, as well as various microscope stages and incubators for large or temperature-sensitive samples. Find the best light microscopes in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Software PlatformsSoftware platforms are useful for various stages of laboratory experiments from data collection to data storage and processing. For instance lab software is available for system control, data management, data analysis and qualification / validation.EMCCDsCMOS CameraMicroscopyMicroscopy is a technique used to observe small objects in detail, from cells to materials, using light or electron microscopes. It enables researchers to examine structures with high resolution, aiding in fields such as biology, medicine, and materials science. With advanced microscopy techniques, scientists can gain insights into cellular processes, tissue structures, and material properties. Explore the best microscopy solutions in our peer-reviewed product directory, compare products, read customer reviews, and get pricing directly from manufacturers.Digital ImagingDigital imaging is a technique that captures images of biological and chemical samples in high resolution, often using advanced cameras and sensors. This technology is crucial in microscopy, diagnostics, and quality control. Explore digital imaging systems in our peer-reviewed product directory; compare products, check reviews, and get pricing directly from manufacturers.
Bitplane Makes the IMS File Format Open Source