Agilent Technologies Shares Vision for Precision Genomics at ASHG 2015

7 Oct 2015
Lois Manton-O'Byrne, PhD
Executive Editor

Product news

Agilent Technologies Inc. is sharing its vision for precision medicine this week at the annual meeting of the American Society of Human Genomics. The conference, held in Baltimore, Maryland, is a forum for discussing recent advances in all areas of human genetics.

“As new technologies and greater understanding of the causes and pathways of diseases are moving through the research-clinical continuum, they are driving a revolution in precision medicine—a revolution that is enabling physicians to identify and treat maladies earlier, more effectively and at a lower cost,” said Herman Verrelst, Agilent vice president and general manager, Genomics Solutions Division and Clinical Applications Division.

“Precision medicine requires precision genomics,” he said. “Agilent is focusing its efforts on developing solutions for human and reproductive genetics and cancer genetics. Our latest products, which we are showcasing at ASHG, demonstrate how Agilent is enabling clinical researchers to detect disease-associated genetic changes faster, more cost-effectively and with confidence.”

A speaker at the conference, Verrelst noted that Agilent has initiatives in place to develop products for single-cell and liquid-biopsy analyses and is currently collaborating with key laboratories. These initiatives, he said, will be important in screening for and tracking genetic changes in reproductive and cancer samples.

In addition, he said, Agilent’s recent acquisition of Cartagenia enhances its bioinformatics portfolio and provides customers with access to clinical-grade data-interpretation support software to visualize, assess and report clinical genetics data in the context of patient information.

Building on a strong legacy and expertise within bioreagents, automation and informatics, Agilent this week is showcasing a number of innovative products to support clinical research:

  • GenetiSure Pre-Screen kit for analysis of single cells in embryos.
  • OneSeq target enrichment for genome-wide detection of copy number variations, loss of heterozygosity and mutations—all in a single assay.
  • HaloPlexHS target enrichment for detecting rare variants (<1% allele frequency) using molecular barcodes.
  • SureSelect Human All Exon V6 for targeting exons in even hard-to-capture regions.
  • The AriaMx Real-Time PCR system for amplifying, detecting and analyzing polymerase chain reactions.

Agilent also is showcasing its Cartagenia Bench Lab NGS product that provides interpretation support to identify and report on clinically relevant variants in next-generation sequencing.

HaloPlex Target Enrichment System

Agilent Technologies

Now delivering unparalleled productivity. Enrich any gene panel with our simple, fast and high-performing protocol! Only HaloPlex enables generation of paired-end reads, even when sequencing single-end, with the Paired-End by Design System. Overcome the limitations of Multiplex PCR >20,000 amplicons per tube, with inclusion of multiple amplicon coverage of each base No primer cross-reactivity or dropouts Improved artifact filtration Create your Design in 5 minutes using the SureDesign -The Next Generation Design Tool (https://earray.chem.agilent.com/suredesign/) Obtain an average of over 95% target coverage Learn More: agilent.com/genomics/ngs

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HaloPlex Cancer Research Panel

Agilent Technologies

The HaloPlex Cancer Research Panel enables fast, simple, and efficient analysis of genomic regions of interest for cancer research for a large number of sample types, including FFPE. HaloPlex Cancer is uniquely suited to high performance with cancer research samples, which are commonly preserved as formalin fixed and paraffin embedded (FFPE). This FFPE process often results in highly fragmented DNA, resulting in insufficient sequencing target coverage.Unlike competitive technologies, HaloPlex covers each base with several amplicons, and smaller fragments function as a backup for longer fragments that may fail. This allows for high sequencing target coverage even in highly degraded FFPE samples. FFPE also commonly produces small changes in single bases, cytosine to thymine, in DNA sequences.HaloPlex Cancer Research Panel Features: 47 genes targeting COSMIC mutations Multiplex 96 samples on 1 MiSeq run Compatible with Ion Torrent & Illumina Desktop Sequencers Analyze samples with SureCall Easily customizable in SureDesign

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Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.ImmunologyImmunological techniques measure and characterize immune responses. Immunology kits and analysis systems often use techniques such as ELISA, radioimmunoassay (RIA) and immunodiffusion assays, Immunohistochemistry, and flow cytometry. Immunologists use equipment such as flow Cytometers, plate readers, plate washers and fluorescent microscopes.Cell-Based AssaysCell-based assays are used to monitor the presence, quantity and activities of a desired cellular analyte including drug molecules or biomarkers. This can reveal information on cell health (apoptosis, cytotoxicity, viability and proliferation assays), cell metabolism, cell migration and cell signaling mechanisms. Find the best cell-based assay products, kits and equipment with our peer reviewed product directory: compare products, check customer reviews and receiving pricing direct from manufacturers.Gene Expression and Molecular CloningMolecular cloning is a set of techniques that utilizes vectors to transfer recombinant DNA into host cells and is an essential tool for investigating the expression of genes and proteins in bacterial or mammalian cells. A variety of vectors optimized for gene cloning and expression in a range of host organisms are available, alongside competent cells for genetic replication. Here, you can explore a range of molecular tools, high-quality genomic and cDNA libraries, premade clones, transformation and transfection reagents and mutagenesis or gene expression detection assays and expression arrays. Find the best gene expression and molecular cloning products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Clinical GeneticsMolecular Genetics covers the analysis of hereditary genetic disease and chromosomal abnormalities. Genetics can be analysed using DNA, RNA, and protein microarrays, PCR, RT PCR and DNA sequencing. Genetic equipment includes genetic workstations, thermal cyclers, cooling blocks and electrophoresis products. Diagnostic kits are used for DNA / RNA extraction and purification.Target-EnrichmentEmbryonic Stem CellsExonPrecision MedicinePrecision medicine refers to the idea of customized healthcare, where medical decisions and treatments are tailored to the individual patient. Molecular diagnostics, companion diagnostics and Next Generation Sequencing (NGS) play a pivotal role in this approach. ASHGLiquid BiopsiesLiquid biopsies are non-invasive tests used to detect cancer and other diseases by analyzing blood or other bodily fluids. This technique is gaining popularity for early detection, monitoring treatment response, and detecting minimal residual disease. Explore liquid biopsy solutions in our peer-reviewed product directory; compare products, check reviews, and get pricing directly from manufacturers.Cancer ResearchAlthough cancer is often referred to as a single condition, it actually consists of more than 100 different diseases. Microscopy, mass spectrometry, high throughput sequencing and flow cytometry are some of the most common techniques employed in cancer research labs.
Agilent Technologies Shares Vision for Precision Genomics at ASHG 2015