Agilent Technologies Introduces Tool to Enhance Integrity of Genomics Experiments

19 Jan 2015
Sarah Thomas
Associate Editor

Product news

Agilent Technologies Inc. has announced the addition of an important new feature to its Genomic DNA ScreenTape assay-the DNA Integrity Number, or DIN, for assessing the integrity of genomic DNA.

The new feature is designed to ensure the quality of genomics experiments, especially next-generation sequencing (NGS). It builds on Agilent's technology for assessing the integrity of RNA-the RNA Integrity Number, or RIN-which has become a market-leading standard.

With the new software feature, the Agilent Genomic DNA ScreenTape assay can now provide an objective measure of DNA integrity for a wide range of samples-not just intact samples from fresh tissue but even the highly degraded samples often obtained from formalin-fixed, paraffin-embedded tissues.

The ability to accurately assess the quality of DNA samples is becoming more important as researchers engage in ever-larger NGS studies. DIN could also prove invaluable at large repositories of tissues, known as biobanks, as a tool for measuring archival quality.

The DIN is expected to play a key role in determining the quality of samples as they enter the NGS workflow. It will help researchers better define their genomic DNA samples, standardize their integrity assessment and potentially streamline their sequencing workflow.

Agilent is making DIN freely available as a software upgrade. To download the new software and to find out more information about DIN, click on the company website link below.

Genomic DNA ScreenTape

Agilent Technologies

Genomic DNA ScreenTape analysis provides fast, automated and reliable electrophoretic separation of input genomic DNA samples. The gDNA ScreenTape assay can separate DNA samples from 200 to more than 60,000 base pairs in less than 2 minutes/sample. Samples can be analyzed from multiple sources including FFPE.

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Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.DNA / RNA Extraction and PurificationPurified DNA and RNA are required for numerous downstream molecular biology applications. Consequently, the importance of high-quality DNA/RNA extraction and purification equipment cannot be underestimated. Many purification kits are available and are typically optimized for nucleic acid type and source, including plasmid DNA, genomic DNA, mRNA, RNA and viral nucleic acid purification kits. Automated extraction and purification of nucleic acids can be implemented with magnetic bead separator instruments or high-throughput purification workstations. Find the best DNA/RNA extraction and purification equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Next Generation SequencingNext-generation sequencing (NGS), also known as whole-genome sequencing, high-throughput sequencing and massive parallel sequencing, produces and analyses thousands to millions of nucleotide sequences at once. Sequencing systems operate via varying technologies depending on the manufacturer, including sequencing by synthesis, ligation, pyrosequencing, ion semiconductor and single-molecule real-time sequencing. For NGS, library preparation is paramount to successful sequencing. In this section, explore a range of library preparation kits, from targeted, amplicon-based or hybridization-based kits including epigenomic, transcriptomic and genomic workflows to fragmentation kits. Find the best next-generation sequencing products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.
Agilent Technologies Introduces Tool to Enhance Integrity of Genomics Experiments