A Faster Way to Separate Proteins with Electrophoresis

Fisher BioReagents FastRun Tris SDS PAGE Running Buffer is designed to deliver clear results at high voltages in significantly reduced time

4 May 2016
Weylan Kiam-Laine
Microbiologist

Product news

A new running buffer is designed for use at higher voltages than traditional buffers, providing gradient-like electrophoretic separations of protein samples in nearly one-third less time and with a broad molecular weight separation range.

The new Fisher BioReagents FastRun Tris SDS PAGE Running Buffer provides comparable or better resolution and an increased molecular weight separation range of proteins when compared to traditional Tris-Glycine-SDS buffer. The new buffer system also reduces the number of Tris-Glycine polyacrylamide gel compositions required to resolve a protein, saving researchers time and money.

“For more than 40 years, the same buffer system has been used with Tris-Glycine polyacrylamide gels for high-resolution fractionation of protein mixtures,” said Stephen C. Roemer, Ph.D., director of product development at Thermo Fisher Scientific. “The traditional buffer system can be limiting for researchers because of the long run times and low voltage limits. The new Fisher BioReagents FastRun Tris SDS PAGE Running Buffer is the first major breakthrough in this space in decades because of its ability to be used at higher voltages.”

Tris-Glycine mini-gels (precast or home-made) prepared with the conventional buffer system are typically run at 125 V. The buffer system heats up at high voltages, which in turn heats the gel, resulting in a breakdown of the protein bands and loss of resolution. The Fisher BioReagents FastRun buffer can be run at a higher voltage (200 V recommended) because it does not generate excessive heat. The result is a significant improvement in run times. In an example, gels run with the new buffer system took only 25 minutes, compared to 90-minute run times with the traditional reagents.

Fisher BioReagents FastRun buffer is compatible with standard Tris-Glycine polyacrylamide gels (precast or home-made) and with all commercially available protein electrophoresis tanks.

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ElectrophoresisElectrophoresis equipment is used to separate mixtures of protein, DNA or RNA, based on their electric charge, size and other physical characteristics, by passing them through a medium such as a polyacrylamide gel, an agarose gel or a capillary tube. Electrophoresis equipment includes horizontal and vertical gel electrophoresis chambers, isoelectric focusing systems, 2D electrophoresis and capillary electrophoresis instruments. Precast gels with a gradient can be used or gels can be hand cast. Samples are run alongside ladders or markers to identify the approximate size of a molecule. Separated proteins and nucleic acids in the gel can be stained or probed with fluorescent markers and then imaged and detected using gel documentation instruments, transilluminators, densitometers and scanners. Find the best electrophoresis equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.OligonucleotidesOligonucleotides are small nucleic acid polymers, usually less than 20 bases in length. Oligonucleotides can be made via enzymatic cleavage or more commonly by chemical synthesis with polymerases. Their use includes FISH, southern blots, microarrays and as primers in PCR. High fidelity synthesis kits and detection systems are available for easy production and detection, respectively.ProteomicsProteomics is the systemic bioinformatics study of proteins and amino acids, including their structure, size, function and identification. Tools used in proteomics include chromatography, blotting and gels, protein arrays, mass spectrometry and ELISA and associated analysis software. Analyzers and proteomic systems should be sensitive, high resolution, fast and may be automated for high-throughput.Gel Doc / Image AnalysisGel documentation (gel doc) or gel imaging systems are used for the analysis of proteins, antibodies and nucleic acid immobilized in polyacrylamide or agarose gels, membranes or microarrays. Explore a range of a gel imaging systems, densitometers, scanners, transilluminators or UV lamp + CCD cameras for your image analysis solutions. Colorimetric, fluorescent and/or radioisotopic samples can be visualized and documented for further analysis. See gel doc / Image analysis software for quantitative 1D and 2D analysis of your samples. Find the best gel doc / image analysis products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.DNA SequencingDNA sequencing, such as sanger sequencing, is a biological technique that determines the precise order of nucleotide bases in a fragment or template of DNA. DNA sequencers and genetic analyzers are based on capillary electrophoresis, where labeled DNA fragments are electrophoretically separated by size as they migrate through a polymer. Find the best DNA sequencing products, including DNA sequencing kits, genomic libraries and genetic identity kits in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Protein QuantificationThe detection and quantification of proteins in a sample is vital across life sciences, pharmaceutical research and clinical diagnostics, and a variety of equipment is available to scientists to simplify the workflow. Proteins of interest can be easily labeled and detected on light-based detection instruments. Immunoassay kits allow you to identify a specific protein of interest and protein detection beads or antibody microarrays allow you to identify multiple specific proteins at once. Protein interactions and enzyme activity can also be monitored with protein-protein interaction assays. Additionally, the biophysical characterization of proteins is made easy with biokinetic analyzers. Find the best protein detection and quantification products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Protein SeparationElectrophoresisGel ImagingGel imaging captures high-resolution images of electrophoresis gels to analyze DNA, RNA, and proteins. Essential in molecular biology, this technique helps visualize results for accurate quantification and documentation. Discover top imaging systems and compare user-reviewed options in our directory.Molecular Weight AnalysisMolecular weight analysis determines the size and structure of biomolecules, essential in protein characterization, polymer studies, and drug development. Techniques like mass spectrometry ensure precise results. Compare solutions for molecular weight analysis in our peer-reviewed product directory.